Source code for distributed.protocol.serialize

from __future__ import annotations

import importlib
import traceback
from array import array
from enum import Enum
from functools import partial
from types import ModuleType

import msgpack

import dask
from dask.base import normalize_token
from dask.utils import typename

from ..utils import ensure_bytes, has_keyword
from . import pickle
from .compression import decompress, maybe_compress
from .utils import frame_split_size, msgpack_opts, pack_frames_prelude, unpack_frames

dask_serialize = dask.utils.Dispatch("dask_serialize")
dask_deserialize = dask.utils.Dispatch("dask_deserialize")

_cached_allowed_modules: dict[str, ModuleType] = {}


def dask_dumps(x, context=None):
    """Serialize object using the class-based registry"""
    type_name = typename(type(x))
    try:
        dumps = dask_serialize.dispatch(type(x))
    except TypeError:
        raise NotImplementedError(type_name)
    if has_keyword(dumps, "context"):
        header, frames = dumps(x, context=context)
    else:
        header, frames = dumps(x)

    header["type"] = type_name
    header["type-serialized"] = pickle.dumps(type(x), protocol=4)
    header["serializer"] = "dask"
    return header, frames


def dask_loads(header, frames):
    typ = pickle.loads(header["type-serialized"])
    loads = dask_deserialize.dispatch(typ)
    return loads(header, frames)


def pickle_dumps(x, context=None):
    frames = [None]
    buffer_callback = lambda f: frames.append(memoryview(f))
    frames[0] = pickle.dumps(
        x,
        buffer_callback=buffer_callback,
        protocol=context.get("pickle-protocol", None) if context else None,
    )
    header = {
        "serializer": "pickle",
        "writeable": tuple(not f.readonly for f in frames[1:]),
    }
    return header, frames


def pickle_loads(header, frames):
    x, buffers = frames[0], frames[1:]

    writeable = header.get("writeable")
    if not writeable:
        writeable = len(buffers) * (None,)

    new = []
    memoryviews = map(memoryview, buffers)
    for w, mv in zip(writeable, memoryviews):
        if w == mv.readonly:
            if mv.readonly:
                mv = memoryview(bytearray(mv))
            else:
                mv = memoryview(bytes(mv))
            if mv.nbytes > 0:
                mv = mv.cast(mv.format, mv.shape)
            else:
                mv = mv.cast(mv.format)
        new.append(mv)

    return pickle.loads(x, buffers=new)


def import_allowed_module(name):
    if name in _cached_allowed_modules:
        return _cached_allowed_modules[name]

    # Check for non-ASCII characters
    name = name.encode("ascii").decode()
    # We only compare the root module
    root = name.split(".", 1)[0]

    # Note, if an empty string creeps into allowed-imports it is disallowed explicitly
    if root and root in dask.config.get("distributed.scheduler.allowed-imports"):
        _cached_allowed_modules[name] = importlib.import_module(name)
        return _cached_allowed_modules[name]
    else:
        raise RuntimeError(
            f"Importing {repr(name)} is not allowed, please add it to the list of "
            "allowed modules the scheduler can import via the "
            "distributed.scheduler.allowed-imports configuration setting."
        )


def msgpack_decode_default(obj):
    """
    Custom packer/unpacker for msgpack
    """
    if "__Enum__" in obj:
        mod = import_allowed_module(obj["__module__"])
        typ = getattr(mod, obj["__name__"])
        return getattr(typ, obj["name"])

    if "__Set__" in obj:
        return set(obj["as-list"])

    if "__Serialized__" in obj:
        # Notice, the data here is marked a Serialized rather than deserialized. This
        # is because deserialization requires Pickle which the Scheduler cannot run
        # because of security reasons.
        # By marking it Serialized, the data is passed through to the workers that
        # eventually will deserialize it.
        return Serialized(*obj["data"])

    return obj


def msgpack_encode_default(obj):
    """
    Custom packer/unpacker for msgpack
    """

    if isinstance(obj, Serialize):
        return {"__Serialized__": True, "data": serialize(obj.data)}

    if isinstance(obj, Enum):
        return {
            "__Enum__": True,
            "name": obj.name,
            "__module__": obj.__module__,
            "__name__": type(obj).__name__,
        }

    if isinstance(obj, set):
        return {"__Set__": True, "as-list": list(obj)}

    return obj


def msgpack_dumps(x):
    try:
        frame = msgpack.dumps(x, use_bin_type=True)
    except Exception:
        raise NotImplementedError()
    else:
        return {"serializer": "msgpack"}, [frame]


def msgpack_loads(header, frames):
    return msgpack.loads(b"".join(frames), use_list=False, **msgpack_opts)


def serialization_error_loads(header, frames):
    msg = "\n".join([ensure_bytes(frame).decode("utf8") for frame in frames])
    raise TypeError(msg)


families = {}


def register_serialization_family(name, dumps, loads):
    families[name] = (dumps, loads, dumps and has_keyword(dumps, "context"))


register_serialization_family("dask", dask_dumps, dask_loads)
register_serialization_family("pickle", pickle_dumps, pickle_loads)
register_serialization_family("msgpack", msgpack_dumps, msgpack_loads)
register_serialization_family("error", None, serialization_error_loads)


def check_dask_serializable(x):
    if type(x) in (list, set, tuple) and len(x):
        return check_dask_serializable(next(iter(x)))
    elif type(x) is dict and len(x):
        return check_dask_serializable(next(iter(x.items()))[1])
    else:
        try:
            dask_serialize.dispatch(type(x))
            return True
        except TypeError:
            pass
    return False


[docs]def serialize( x, serializers=None, on_error="message", context=None, iterate_collection=None ): r""" Convert object to a header and list of bytestrings This takes in an arbitrary Python object and returns a msgpack serializable header and a list of bytes or memoryview objects. The serialization protocols to use are configurable: a list of names define the set of serializers to use, in order. These names are keys in the ``serializer_registry`` dict (e.g., 'pickle', 'msgpack'), which maps to the de/serialize functions. The name 'dask' is special, and will use the per-class serialization methods. ``None`` gives the default list ``['dask', 'pickle']``. Notes on the ``iterate_collection`` argument (only relevant when ``x`` is a collection): - ``iterate_collection=True``: Serialize collection elements separately. - ``iterate_collection=False``: Serialize collection elements together. - ``iterate_collection=None`` (default): Infer the best setting. Examples -------- >>> serialize(1) ({}, [b'\x80\x04\x95\x03\x00\x00\x00\x00\x00\x00\x00K\x01.']) >>> serialize(b'123') # some special types get custom treatment ({'type': 'builtins.bytes'}, [b'123']) >>> deserialize(*serialize(1)) 1 Returns ------- header: dictionary containing any msgpack-serializable metadata frames: list of bytes or memoryviews, commonly of length one See Also -------- deserialize : Convert header and frames back to object to_serialize : Mark that data in a message should be serialized register_serialization : Register custom serialization functions """ if serializers is None: serializers = ("dask", "pickle") # TODO: get from configuration # Handle obects that are marked as `Serialize`, or that are # already `Serialized` objects (don't want to serialize them twice) if isinstance(x, Serialized): return x.header, x.frames if isinstance(x, Serialize): return serialize( x.data, serializers=serializers, on_error=on_error, context=context, iterate_collection=True, ) if iterate_collection is None and type(x) in (list, set, tuple, dict): if type(x) is list and "msgpack" in serializers: # Note: "msgpack" will always convert lists to tuples # (see GitHub #3716), so we should iterate # through the list if "msgpack" comes before "pickle" # in the list of serializers. iterate_collection = ("pickle" not in serializers) or ( serializers.index("pickle") > serializers.index("msgpack") ) if not iterate_collection: # Check for "dask"-serializable data in dict/list/set iterate_collection = check_dask_serializable(x) # Determine whether keys are safe to be serialized with msgpack if type(x) is dict and iterate_collection: try: msgpack.dumps(list(x.keys())) except Exception: dict_safe = False else: dict_safe = True if ( type(x) in (list, set, tuple) and iterate_collection or type(x) is dict and iterate_collection and dict_safe ): if isinstance(x, dict): headers_frames = [] for k, v in x.items(): _header, _frames = serialize( v, serializers=serializers, on_error=on_error, context=context ) _header["key"] = k headers_frames.append((_header, _frames)) else: headers_frames = [ serialize( obj, serializers=serializers, on_error=on_error, context=context ) for obj in x ] frames = [] lengths = [] compressions = [] for _header, _frames in headers_frames: frames.extend(_frames) length = len(_frames) lengths.append(length) compressions.extend(_header.get("compression") or [None] * len(_frames)) headers = [obj[0] for obj in headers_frames] headers = { "sub-headers": headers, "is-collection": True, "frame-lengths": lengths, "type-serialized": type(x).__name__, } if any(compression is not None for compression in compressions): headers["compression"] = compressions return headers, frames tb = "" for name in serializers: dumps, _, wants_context = families[name] try: header, frames = dumps(x, context=context) if wants_context else dumps(x) header["serializer"] = name return header, frames except NotImplementedError: continue except Exception: tb = traceback.format_exc() break msg = "Could not serialize object of type %s." % type(x).__name__ if on_error == "message": frames = [msg] if tb: frames.append(tb[:100000]) frames = [frame.encode() for frame in frames] return {"serializer": "error"}, frames elif on_error == "raise": raise TypeError(msg, str(x)[:10000])
[docs]def deserialize(header, frames, deserializers=None): """ Convert serialized header and list of bytestrings back to a Python object Parameters ---------- header : dict frames : list of bytes deserializers : dict[str, tuple[Callable, Callable, bool]] | None An optional dict mapping a name to a (de)serializer. See `dask_serialize` and `dask_deserialize` for more. See Also -------- serialize """ if "is-collection" in header: headers = header["sub-headers"] lengths = header["frame-lengths"] cls = {"tuple": tuple, "list": list, "set": set, "dict": dict}[ header["type-serialized"] ] start = 0 if cls is dict: d = {} for _header, _length in zip(headers, lengths): k = _header.pop("key") d[k] = deserialize( _header, frames[start : start + _length], deserializers=deserializers, ) start += _length return d else: lst = [] for _header, _length in zip(headers, lengths): lst.append( deserialize( _header, frames[start : start + _length], deserializers=deserializers, ) ) start += _length return cls(lst) name = header.get("serializer") if deserializers is not None and name not in deserializers: raise TypeError( "Data serialized with %s but only able to deserialize " "data with %s" % (name, str(list(deserializers))) ) dumps, loads, wants_context = families[name] return loads(header, frames)
def serialize_and_split( x, serializers=None, on_error="message", context=None, size=None ): """Serialize and split compressable frames This function is a drop-in replacement of `serialize()` that calls `serialize()` followed by `frame_split_size()` on frames that should be compressed. Use `merge_and_deserialize()` to merge and deserialize the frames back. See Also -------- serialize merge_and_deserialize """ header, frames = serialize(x, serializers, on_error, context) num_sub_frames = [] offsets = [] out_frames = [] out_compression = [] for frame, compression in zip( frames, header.get("compression") or [None] * len(frames) ): if compression is None: # default behavior sub_frames = frame_split_size(frame, n=size) num_sub_frames.append(len(sub_frames)) offsets.append(len(out_frames)) out_frames.extend(sub_frames) out_compression.extend([None] * len(sub_frames)) else: num_sub_frames.append(1) offsets.append(len(out_frames)) out_frames.append(frame) out_compression.append(compression) assert len(out_compression) == len(out_frames) # Notice, in order to match msgpack's implicit convertion to tuples, # we convert to tuples here as well. header["split-num-sub-frames"] = tuple(num_sub_frames) header["split-offsets"] = tuple(offsets) header["compression"] = tuple(out_compression) return header, out_frames def merge_and_deserialize(header, frames, deserializers=None): """Merge and deserialize frames This function is a drop-in replacement of `deserialize()` that merges frames that were split by `serialize_and_split()` See Also -------- deserialize serialize_and_split """ merged_frames = [] if "split-num-sub-frames" not in header: merged_frames = frames else: for n, offset in zip(header["split-num-sub-frames"], header["split-offsets"]): if n == 1: merged_frames.append(frames[offset]) else: merged_frames.append(bytearray().join(frames[offset : offset + n])) return deserialize(header, merged_frames, deserializers=deserializers) class Serialize: """Mark an object that should be serialized Examples -------- >>> msg = {'op': 'update', 'data': to_serialize(123)} >>> msg # doctest: +SKIP {'op': 'update', 'data': <Serialize: 123>} See also -------- distributed.protocol.dumps """ def __init__(self, data): self.data = data def __repr__(self): return "<Serialize: %s>" % str(self.data) def __eq__(self, other): return isinstance(other, Serialize) and other.data == self.data def __ne__(self, other): return not (self == other) def __hash__(self): return hash(self.data) to_serialize = Serialize class Serialized: """ An object that is already serialized into header and frames Normal serialization operations pass these objects through. This is typically used within the scheduler which accepts messages that contain data without actually unpacking that data. """ def __init__(self, header, frames): self.header = header self.frames = frames def __eq__(self, other): return ( isinstance(other, Serialized) and other.header == self.header and other.frames == self.frames ) def __ne__(self, other): return not (self == other) def nested_deserialize(x): """ Replace all Serialize and Serialized values nested in *x* with the original values. Returns a copy of *x*. >>> msg = {'op': 'update', 'data': to_serialize(123)} >>> nested_deserialize(msg) {'op': 'update', 'data': 123} """ def replace_inner(x): if type(x) is dict: x = x.copy() for k, v in x.items(): typ = type(v) if typ is dict or typ is list: x[k] = replace_inner(v) elif typ is Serialize: x[k] = v.data elif typ is Serialized: x[k] = deserialize(v.header, v.frames) elif type(x) is list: x = list(x) for k, v in enumerate(x): typ = type(v) if typ is dict or typ is list: x[k] = replace_inner(v) elif typ is Serialize: x[k] = v.data elif typ is Serialized: x[k] = deserialize(v.header, v.frames) return x return replace_inner(x) def serialize_bytelist(x, **kwargs): header, frames = serialize_and_split(x, **kwargs) if frames: compression, frames = zip(*map(maybe_compress, frames)) else: compression = [] header["compression"] = compression header["count"] = len(frames) header = msgpack.dumps(header, use_bin_type=True) frames2 = [header, *frames] frames2.insert(0, pack_frames_prelude(frames2)) return frames2 def serialize_bytes(x, **kwargs): L = serialize_bytelist(x, **kwargs) return b"".join(L) def deserialize_bytes(b): frames = unpack_frames(b) header, frames = frames[0], frames[1:] if header: header = msgpack.loads(header, raw=False, use_list=False) else: header = {} frames = decompress(header, frames) return merge_and_deserialize(header, frames) ################################ # Class specific serialization # ################################ def register_serialization(cls, serialize, deserialize): """Register a new class for dask-custom serialization Parameters ---------- cls : type serialize : callable(cls) -> Tuple[Dict, List[bytes]] deserialize : callable(header: Dict, frames: List[bytes]) -> cls Examples -------- >>> class Human: ... def __init__(self, name): ... self.name = name >>> def serialize(human): ... header = {} ... frames = [human.name.encode()] ... return header, frames >>> def deserialize(header, frames): ... return Human(frames[0].decode()) >>> register_serialization(Human, serialize, deserialize) >>> serialize(Human('Alice')) ({}, [b'Alice']) See Also -------- serialize deserialize """ if isinstance(cls, str): raise TypeError( "Strings are no longer accepted for type registration. " "Use dask_serialize.register_lazy instead" ) dask_serialize.register(cls)(serialize) dask_deserialize.register(cls)(deserialize) def register_serialization_lazy(toplevel, func): """Register a registration function to be called if *toplevel* module is ever loaded. """ raise Exception("Serialization registration has changed. See documentation") @partial(normalize_token.register, Serialized) def normalize_Serialized(o): return [o.header] + o.frames # for dask.base.tokenize # Teach serialize how to handle bytes @dask_serialize.register(bytes) def _serialize_bytes(obj): header = {} # no special metadata frames = [obj] return header, frames # Teach serialize how to handle bytestrings @dask_serialize.register(bytearray) def _serialize_bytearray(obj): header = {} # no special metadata frames = [obj] return header, frames @dask_deserialize.register(bytes) def _deserialize_bytes(header, frames): if len(frames) == 1 and isinstance(frames[0], bytes): return frames[0] else: return bytes().join(frames) @dask_deserialize.register(bytearray) def _deserialize_bytearray(header, frames): if len(frames) == 1 and isinstance(frames[0], bytearray): return frames[0] else: return bytearray().join(frames) @dask_serialize.register(array) def _serialize_array(obj): header = {"typecode": obj.typecode, "writeable": (None,)} frames = [memoryview(obj)] return header, frames @dask_deserialize.register(array) def _deserialize_array(header, frames): a = array(header["typecode"]) for f in map(memoryview, frames): try: f = f.cast("B") except TypeError: f = f.tobytes() a.frombytes(f) return a @dask_serialize.register(memoryview) def _serialize_memoryview(obj): if obj.format == "O": raise ValueError("Cannot serialize `memoryview` containing Python objects") header = {"format": obj.format, "shape": obj.shape} frames = [obj] return header, frames @dask_deserialize.register(memoryview) def _deserialize_memoryview(header, frames): if len(frames) == 1: out = memoryview(frames[0]).cast("B") else: out = memoryview(b"".join(frames)) out = out.cast(header["format"], header["shape"]) return out ######################### # Descend into __dict__ # ######################### def _is_msgpack_serializable(v): typ = type(v) return ( v is None or typ is str or typ is bool or typ is int or typ is float or isinstance(v, dict) and all(map(_is_msgpack_serializable, v.values())) and all(typ is str for x in v.keys()) or isinstance(v, (list, tuple)) and all(map(_is_msgpack_serializable, v)) ) class ObjectDictSerializer: def __init__(self, serializer): self.serializer = serializer def serialize(self, est): header = { "serializer": self.serializer, "type-serialized": pickle.dumps(type(est), protocol=4), "simple": {}, "complex": {}, } frames = [] if isinstance(est, dict): d = est else: d = est.__dict__ for k, v in d.items(): if _is_msgpack_serializable(v): header["simple"][k] = v else: if isinstance(v, dict): h, f = self.serialize(v) else: h, f = serialize(v, serializers=(self.serializer, "pickle")) header["complex"][k] = { "header": h, "start": len(frames), "stop": len(frames) + len(f), } frames += f return header, frames def deserialize(self, header, frames): cls = pickle.loads(header["type-serialized"]) if issubclass(cls, dict): dd = obj = {} else: obj = object.__new__(cls) dd = obj.__dict__ dd.update(header["simple"]) for k, d in header["complex"].items(): h = d["header"] f = frames[d["start"] : d["stop"]] v = deserialize(h, f) dd[k] = v return obj dask_object_with_dict_serializer = ObjectDictSerializer("dask") dask_deserialize.register(dict)(dask_object_with_dict_serializer.deserialize)
[docs]def register_generic( cls, serializer_name="dask", serialize_func=dask_serialize, deserialize_func=dask_deserialize, ): """Register (de)serialize to traverse through __dict__ Normally when registering new classes for Dask's custom serialization you need to manage headers and frames, which can be tedious. If all you want to do is traverse through your object and apply serialize to all of your object's attributes then this function may provide an easier path. This registers a class for the custom Dask serialization family. It serializes it by traversing through its __dict__ of attributes and applying ``serialize`` and ``deserialize`` recursively. It collects a set of frames and keeps small attributes in the header. Deserialization reverses this process. This is a good idea if the following hold: 1. Most of the bytes of your object are composed of data types that Dask's custom serializtion already handles well, like Numpy arrays. 2. Your object doesn't require any special constructor logic, other than object.__new__(cls) Examples -------- >>> import sklearn.base >>> from distributed.protocol import register_generic >>> register_generic(sklearn.base.BaseEstimator) See Also -------- dask_serialize dask_deserialize """ object_with_dict_serializer = ObjectDictSerializer(serializer_name) serialize_func.register(cls)(object_with_dict_serializer.serialize) deserialize_func.register(cls)(object_with_dict_serializer.deserialize)